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Jay Ponder
Associate Professor
Dept. of Biochemistry and
Molecular Biophysics |
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Mailing Address:
WUSM - Biochemistry Dept.
660 S. Euclid Ave., MS8231
St. Louis, MO 63110
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Research Interests
Protein engineering; computer modeling of protein
structure and folding
metabolism
Selected Publications
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Schnieders, M.J., Baker, N.A., Ren, P., and Ponder, J.W. Polarizable atomic multipole solutes in a Poisson-Boltzmann continuum. J. Chem Phys 126:124114-12135 (2007).
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Rasmussen, T.D., Ren, P., Ponder, J.W. and Jensen, F. Force field modeling of conformational energies: Importance of multipole moments and intramolecular polarization. Int J Quantum Chem B 107:1390-1395 (2007).
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Ren, P., and Ponder, J.W. Temperature and Pressure Dependence of the AMOEBA Water Model. J. Phys. Chem. B, 108, 13427-13437 (2004)
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Grossfiled, A., Ren, P. and Ponder, J.W. Ion Solvation Thermodynamics from Simulation with a Polarizable Force Field. J. Am. Chem. Soc., 125, 15671-15682 (2003)
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Ponder, J.w. and Case, D.A. Force Fields for Protein Simulation. Adv. Prot. Chem., 66, 27-85 (2003)
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Ren, P. and Ponder, J.W. Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation. J. Phys. Chem. B, 107, 5933-5947 (2003)
